PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112338001
Common NameGSBRNA2T00112338001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 776aa    MW: 86879 Da    PI: 5.2914
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112338001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.5e-29506556252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  GSBRNA2T00112338001 506 DKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 556
                          69***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.836495576IPR003035RWP-RK domain
PfamPF020421.2E-25508556IPR003035RWP-RK domain
SuperFamilySSF542774.66E-22669761No hitNo description
Gene3DG3DSA:3.10.20.2408.9E-21674753No hitNo description
SMARTSM006661.1E-25675758IPR000270PB1 domain
PROSITE profilePS5174529.376675758IPR000270PB1 domain
PfamPF005644.7E-19676757IPR000270PB1 domain
CDDcd064074.46E-42676756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MEDSYLQTEN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFTWS PTQDTSALLS  60
HMYSQDYAER SSLEEFQWNK RWWIGPGGGA SSVTERLVQA VEHIKDYTTE RGSLIQLWVP  120
VSRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP  180
EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMIKLRPEL  240
ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL  300
QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP  360
CFSPDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR  420
KMLDALSSIM AHVPRSLRTV TDTELEEESE VIVTPKIENT LVFDGGDEHN DVFGLKRGFE  480
YKSSESSMFF CDGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC  540
RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLA SREPSQQGKT  600
SPPLPQPLQL SKSPVSTYSS GSSQCCSSGA TTDPSQGDVR TASSLDETVL TLSSLENNPQ  660
GGTQLLLPSS QDDDSLRIKV SYGEEKIRFR MRDSRRLTDL LWEIGKRFGI EDMSRYDLKY  720
LDEDNEWVLL TCDEDVEECV DVCRTTPSHT IMLLLHVSSH CFPERSSATG YSLWH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.265491e-130leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112338001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910150.0AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBankAY1172370.0AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653422.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A078EJP90.0A0A078EJP9_BRANA; BnaA07g11340D protein
STRINGBra012241.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]